Basic Information
Locus ID:
Sp2g20460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 5699225 | 5699889 | - | Sp2g20460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 19,917.74 Da | 44.54 | 89.54 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 119 | 160 | 6.54907E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 166 | 1.88E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 165 | 5.4E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 160 | 9.789479 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77830.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024006686.1 | E3 ubiquitin-protein ligase RNF181 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KQK4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005670mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77830.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005670m.g.v1.0, Thhalv10019846m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g074000.2N |