Basic Information
Locus ID:
Sp2g19150.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
LRR receptor-like serine threonine-protein kinase At5g48740
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 5195200 | 5199227 | - | Sp2g19150.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 100,516.93 Da | 41.29 | 92.34 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 615 | 881 | 4.35827E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 434 | 492 | 1.1E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 611 | 819 | 2.8E-46 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 27 | 340 | 6.0E-57 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 586 | 880 | 1.48E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 356 | 502 | 2.68E-27 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 188 | 343 | 1.8E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 685 | 891 | 1.5E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 352 | 510 | 5.0E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 570 | 684 | 1.3E-29 | - |
| SMART | SM00369 | LRR_typ_2 | 455 | 478 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 479 | 503 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 432 | 454 | 9.1 | IPR003591 |
| SMART | SM00220 | serkin_6 | 609 | 885 | 7.2E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 609 | 891 | 38.760387 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 434 | 456 | 7.473233 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 731 | 743 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 615 | 637 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48740.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_018477444.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Raphanus sativus] | 0 |
| C0LGV0 | Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana OX=3702 GN=At5g48740 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MZ80 | probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Raphanus sativus OX=3726 GN=LOC108848551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36125, jg8038 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028266 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26545, Sbi_jg34022 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011923 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73830, Sgl77187, Sgl77332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041428 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010340, CQ.Regalona.r1.7BG0012420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014480 |
| Apiaceae | Apium graveolens | 1 | Ag10G00761 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G004280, COCNU_15G004290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710569, gene-LOC103724286 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.898.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30587 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003630m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g069800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1996 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2104 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1563 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011577 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1027, evm.TU.LG12.704 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1208 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11679 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9079 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11240 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.704 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013562 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9839 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19907 |
| Salicaceae | Populus euphratica | 1 | populus_peu30911 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610088 |
| Solanaceae | Solanum chilense | 1 | SOLCI001110400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031385 |