Basic Information
Locus ID:
Sp2g16520.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
UPF0392 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 4222172 | 4225927 | - | Sp2g16520.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 100,069.96 Da | 51.55 | 77.79 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00761 | Glyco_tranf_GTA_type | 286 | 372 | 0.00434427 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 691 | 729 | 1.9E-6 | IPR018957 |
| Pfam | PF01697 | Glycosyltransferase family 92 | 280 | 495 | 2.1E-43 | IPR008166 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 285 | 377 | 1.83E-6 | IPR029044 |
| SUPERFAMILY | SSF57850 | RING/U-box | 683 | 754 | 5.74E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 638 | 760 | 2.5E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 691 | 729 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 691 | 730 | 12.223724 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 706 | 715 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 792 | - | - |
| Coils | Coil | Coil | 629 | 671 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27330.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_024006691.1 | LOW QUALITY PROTEIN: glycosyltransferase family 92 protein RCOM_0530710 [Eutrema salsugineum] | 0 |
| B9SLR1 | Glycosyltransferase family 92 protein RCOM_0530710 OS=Ricinus communis OX=3988 GN=RCOM_0530710 PE=3 SV=1 | 0 | |
| TrEMBL | V4KRU7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003629mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology