Basic Information
Locus ID:
Sp2g15840.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 3980013 | 3990356 | + | Sp2g15840.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 114,691.28 Da | 36.98 | 83.28 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 316 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 357 | 449 | 2.5E-20 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 602 | 813 | 1.3E-49 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 352 | 2.5E-98 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 895 | 1000 | 1.5E-12 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1003 | 1.18E-140 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 355 | 1.45E-113 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 456 | 9.81E-27 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 879 | 1007 | 4.4E-36 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 599 | 1.7E-28 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 600 | 861 | 2.8E-94 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 320 | 8.3E-124 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 321 | 398 | 1.1E-32 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 456 | 2.9E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 357 | 431 | 8.3E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_009152026.1 | alpha-mannosidase At3g26720 [Brassica rapa] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3GU93 | Alpha-mannosidase OS=Noccaea caerulescens OX=107243 GN=LE_TR9514_c0_g1_i1_g.32166 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology