Basic Information
Locus ID:
Sp2g14880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 3607392 | 3607883 | + | Sp2g14880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 17,785.90 Da | 25.54 | 91.66 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 13 | 74 | 8.7E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 88 | 150 | 3.0E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 151 | 9.28E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 80 | 157 | 1.0E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 79 | 4.6E-17 | - |
| SMART | SM00054 | efh_1 | 89 | 117 | 3.5E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 50 | 78 | 4.7 | IPR002048 |
| SMART | SM00054 | efh_1 | 14 | 42 | 0.0024 | IPR002048 |
| SMART | SM00054 | efh_1 | 125 | 153 | 6.5E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 10 | 45 | 14.234451 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 121 | 156 | 12.309669 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 46 | 81 | 9.018011 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 85 | 120 | 14.736568 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 59 | 71 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 23 | 35 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 98 | 110 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 134 | 146 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_033136463.1 | probable calcium-binding protein CML16 [Brassica rapa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A565BN48 | Calcium-binding protein CML16 OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS13179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology