Basic Information
Locus ID:
Sp2g13185.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin protein ligase RIE1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 2930911 | 2932620 | + | Sp2g13185.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 42,976.97 Da | 48.37 | 95.30 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 334 | 376 | 3.65841E-19 | - |
| Pfam | PF13639 | Ring finger domain | 334 | 376 | 7.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 381 | 9.19E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 386 | 2.8E-18 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 331 | 383 | 0.0074 | - |
| SMART | SM00184 | ring_2 | 335 | 375 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 335 | 376 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01735.1 | RING-finger protein for embryogenesis. encodes a RING-H2 zinc finger protein essential for seed development. | 0 |
| RefSeq | XP_006395857.1 | E3 ubiquitin protein ligase RIE1 [Eutrema salsugineum] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | V4L0A7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004486mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology