Basic Information
Locus ID:
Sp2g12920.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Contains the following InterPro domains WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat 2 (InterPro IPR019782), WD40-repeat-containing domain (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat, subgroup (InterPro IPR019781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 2822671 | 2825029 | - | Sp2g12920.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 43,206.81 Da | 36.59 | 87.53 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 191 | 220 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 351 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 178 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 56 | 347 | 3.45E-31 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 359 | 1.8E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 0.0076 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 354 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 86 | 124 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 220 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 71.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013724232.1 | SEC12-like protein 2 [Brassica napus] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A078ITJ6 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaCnng22210D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology