Basic Information
Locus ID:
Sp2g12720.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 2747313 | 2749271 | - | Sp2g12720.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 72,399.54 Da | 48.45 | 71.75 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 165 | 1.52138E-23 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 13 | 356 | 1.5E-101 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 76 | 164 | 1.6E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 418 | 2.6E-11 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 358 | 473 | 2.55E-27 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 203 | 6.62E-45 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 9.16E-60 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 13 | 354 | 8.9E-149 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 8.9E-149 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 468 | 2.1E-23 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 607 | 6.7E-206 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 585 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_018450806.1 | PREDICTED: nuclear poly(A) polymerase 1 isoform X1 [Raphanus sativus] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KSA0 | polynucleotide adenylyltransferase OS=Raphanus sativus OX=3726 GN=LOC108822271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology