Basic Information
Locus ID:
Sp2g11630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 2356152 | 2358333 | + | Sp2g11630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 55,072.16 Da | 41.35 | 78.80 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 328 | 404 | 9.13318E-40 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 335 | 380 | 1.8E-8 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 37 | 220 | 4.5E-49 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 334 | 401 | 1.22E-15 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 324 | 397 | 1.4E-13 | IPR036638 |
| SMART | SM00353 | finulus | 337 | 386 | 2.1E-12 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 331 | 380 | 15.884796 | IPR011598 |
| Coils | Coil | Coil | 377 | 404 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46830.1 | NACL-inducible gene 1. Calcium-binding transcription factor involved in salt stress signaling. | 0 |
| RefSeq | XP_009114323.2 | transcription factor bHLH28 [Brassica rapa] | 0 |
| Q9LUK7 | Transcription factor bHLH28 OS=Arabidopsis thaliana OX=3702 GN=BHLH28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078J6C3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA09g53560D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology