Basic Information
Locus ID:
Sp2g09500.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
GPI-anchored adhesin-like protein PGA55
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 1442351 | 1444598 | - | Sp2g09500.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 69,016.93 Da | 49.99 | 64.61 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 550 | 589 | 1.08126E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 548 | 595 | 7.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 550 | 596 | 7.46E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 540 | 602 | 1.1E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 551 | 589 | 10.202563 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 315 | - | - |
| Coils | Coil | Coil | 508 | 528 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44690.1 | 0 | |
| RefSeq | XP_013617643.1 | PREDICTED: uncharacterized protein LOC106324177 [Brassica oleracea var. oleracea] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A3P6DCC5 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T10557H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22433 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6132 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg15962 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24587 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013748 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71751, Sgl71785, Sgl75319, Sgl75352 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000037628 |
| Apiaceae | Apium graveolens | 1 | Ag7G00435 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G26808, Ftri18G14861 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G30860.1, AT2G34920.1, AT5G44690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006896m.g.v1.0, Thhalv10016344m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26760.v2.2, Sp2g09500.v2.2, Sp4g17220.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g009380.2N, BniB01g009390.2N, BniB04g046740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0017 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0039 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3045 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.292 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038688 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25218 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31798 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.269, evm.TU.LG04.486 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1049 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13448 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5336, nbisL1-mrna-7181 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4364, nbisL1-mrna-9272 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.296, evm.TU.utg000008l.834 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000868, Maker00004249 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2218, nbisL1-mrna-3649 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7662, nbisL1-mrna-9626 |
| Salicaceae | Populus euphratica | 3 | populus_peu03842, populus_peu12404, populus_peu34678 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622313, gene-LOC132631865 |
| Solanaceae | Solanum chilense | 2 | SOLCI003805600, SOLCI007218900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002538, gene-LOC107011145 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.12198_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0624 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19250.v3.1 |