Basic Information
Locus ID:
Sp2g08740.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 1061643 | 1064051 | + | Sp2g08740.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 59,784.43 Da | 35.10 | 91.15 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 513 | 1.73165E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 0.0096 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 513 | 4.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 6.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 471 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 335 | 0.063 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 211 | 513 | 1.73E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 197 | 477 | 1.2E-56 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 478 | 520 | 1.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 345 | 385 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 471 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 425 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 343 | 0.08 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.7E-7 | IPR001680 |
| SMART | SM00667 | Lish | 16 | 48 | 9.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 474 | 514 | 1.9E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 49 | 107 | 1.1E-4 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 513 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 513 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 49 | 107 | 9.821097 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 480 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 16 | 48 | 9.528418 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 10.548323 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 458 | 472 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 458 | 472 | 9.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 239 | 253 | 9.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 9.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006403164.1 | WD repeat-containing protein WDS homolog [Eutrema salsugineum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3HFZ9 | WD repeat-containing protein 26 OS=Noccaea caerulescens OX=107243 GN=LE_TR9368_c0_g1_i1_g.31689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology