Basic Information
Locus ID:
Sp2g04390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 977403 | 978082 | - | Sp2g04390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 17,905.79 Da | 47.63 | 71.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 143 | 1.54E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 148 | 3.5E-7 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15530.4 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024006785.1 | E3 ubiquitin-protein ligase MBR2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MIM2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005473mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005473m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04390.v2.2, SpUn0426_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014870.2N |