Basic Information
Locus ID:
Sp2g03870.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 717537 | 717938 | + | Sp2g03870.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 14,990.15 Da | 43.12 | 82.93 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12231 | RRM2_U2AF65 | 13 | 88 | 1.35039E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 84 | 3.7E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 13 | 94 | 2.99E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 10 | 64 | 2.2E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 65 | 86 | 2.2E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 14 | 87 | 1.0E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 91 | 11.963396 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60900.1 | U2 snRNP auxilliary factor, large subunit, splicing factor. | 0 |
| RefSeq | XP_010547528.1 | PREDICTED: splicing factor U2af large subunit B isoform X7 [Tarenaya hassleriana] | 0 |
| Q8L716 | Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B PE=1 SV=2 | 0 | |
| TrEMBL | A0A6D2IKS0 | RRM domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS16843 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03870.v2.2 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g16090, gene.Thate02g27300, gene.Thate03g17860 ... |