Basic Information
Locus ID:
Sp2g03660.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 615457 | 622821 | + | Sp2g03660.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 128,695.76 Da | 43.89 | 84.12 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 462 | 661 | 5.4824E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 662 | 785 | 7.86627E-62 | - |
| Pfam | PF16124 | RecQ zinc-binding | 787 | 866 | 3.3E-14 | IPR032284 |
| Pfam | PF09382 | RQC domain | 875 | 988 | 2.9E-20 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 473 | 641 | 4.3E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 678 | 775 | 1.8E-10 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1026 | 1093 | 2.6E-16 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 660 | 918 | 1.31E-50 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 794 | 3.13E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1026 | 1096 | 5.01E-14 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 662 | 869 | 3.0E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 434 | 661 | 1.9E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1018 | 1105 | 2.4E-22 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 874 | 984 | 2.4E-19 | IPR036388 |
| SMART | SM00487 | ultradead3 | 467 | 670 | 1.3E-31 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1021 | 1108 | 3.3E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 876 | 987 | 4.4E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 704 | 776 | 3.5E-16 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 463 | 927 | 2.3E-148 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 675 | 736 | 8.642616 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 479 | 654 | 23.171907 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1021 | 1103 | 18.260584 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 679 | 829 | 11.141314 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 593 | 602 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1123 | - | - |
| Coils | Coil | Coil | 334 | 361 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_006392095.1 | ATP-dependent DNA helicase Q-like 4B [Eutrema salsugineum] | 0 |
| Q9FT70 | ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B PE=2 SV=1 | 0 | |
| TrEMBL | V4MDR0 | DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023226mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology