Basic Information
Locus ID:
Sp2g03350.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ATP binding DNA binding helicase nucleic acid binding protein binding zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 459893 | 466390 | + | Sp2g03350.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 140,476.19 Da | 52.66 | 71.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1079 | 1229 | 2.95581E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 581 | 900 | 1.40584E-85 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1006 | 1043 | 4.1E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1119 | 1219 | 7.3E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 601 | 977 | 1.7E-68 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1003 | 1051 | 3.09E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 571 | 900 | 1.05E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 909 | 1276 | 4.83E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 915 | 1278 | 6.1E-67 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 995 | 1056 | 1.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 768 | 911 | 2.7E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 559 | 749 | 2.2E-21 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1136 | 1219 | 4.0E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 1006 | 1044 | 4.2E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 577 | 877 | 2.7E-30 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1006 | 1045 | 10.541882 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1097 | 1272 | 14.935616 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 596 | 862 | 12.495901 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_024013259.1 | LOW QUALITY PROTEIN: helicase-like transcription factor CHR28 [Eutrema salsugineum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | V4JVA9 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023220mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology