Basic Information
Locus ID:
Sp2g03270.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 427412 | 434117 | - | Sp2g03270.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 123,542.45 Da | 53.25 | 79.25 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 293 | 2.85662E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 4.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 9.2E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 128 | 3.0E-6 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 965 | 1123 | 1.1E-48 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 6.02E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 198 | 9.3E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 299 | 1.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 5.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.553762 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.420132 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.55969 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.998316 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 115 | 129 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1126 | 19.359268 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 581 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_018440015.1 | PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Raphanus sativus] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3EWP6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Noccaea caerulescens OX=107243 GN=LC_TR211_c0_g1_i1_g.620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology