Basic Information
Locus ID:
Sp2g02610.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 78427 | 79387 | - | Sp2g02610.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 34,075.67 Da | 43.62 | 93.73 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 23 | 165 | 1.2E-32 | IPR003690 |
| Pfam | PF02536 | mTERF | 155 | 268 | 5.7E-40 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 32 | 278 | 4.5E-43 | IPR038538 |
| SMART | SM00733 | mt_12 | 80 | 109 | 1400.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 113 | 143 | 5.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 215 | 249 | 0.33 | IPR003690 |
| SMART | SM00733 | mt_12 | 183 | 214 | 6.0E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 148 | 178 | 1.2E-4 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013625145.1 | PREDICTED: uncharacterized protein LOC106331356 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A3P6AKN4 | Transcription termination factor MTERF8, chloroplastic-like OS=Brassica oleracea OX=3712 GN=BOLC3T17768H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |