halophFGD

Basic Information

Locus ID: Sp2g02600.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: mitochondrial transcription termination factor family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch2-2	75355	76631	-	Sp2g02600.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.56	40,213.65 Da	38.52	90.90	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	88	143	7.2E-13	IPR003690
Pfam	PF02536	mTERF	144	227	2.0E-13	IPR003690
Pfam	PF02536	mTERF	206	331	1.0E-38	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	55	339	1.1E-44	IPR038538
SMART	SM00733	mt_12	102	133	2.6	IPR003690
SMART	SM00733	mt_12	245	276	1.4	IPR003690
SMART	SM00733	mt_12	277	311	0.033	IPR003690
SMART	SM00733	mt_12	210	240	5.7E-5	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61990.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_024015485.1	transcription termination factor MTERF2, chloroplastic isoform X2 [Eutrema salsugineum]
Swiss-Prot	F4IHL3	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1
TrEMBL	A0A6D2IPJ3	Mitochondrial transcription termination factor family protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS17067 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	13	AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... AT1G61990.1, AT1G62010.1, AT1G62085.1, AT1G62110.1, AT1G62120.1, AT1G62150.1, AT1G62490.1, AT3G46950.1, AT5G23930.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... Thhalv10022427m.g.v1.0, Thhalv10023445m.g.v1.0, Thhalv10023447m.g.v1.0, Thhalv10023457m.g.v1.0, Thhalv10023461m.g.v1.0, Thhalv10023467m.g.v1.0, Thhalv10023470m.g.v1.0, Thhalv10023472m.g.v1.0, Thhalv10023505m.g.v1.0, Thhalv10023801m.g.v1.0, Thhalv10023838m.g.v1.0, Thhalv10023868m.g.v1.0, Thhalv10023911m.g.v1.0, Thhalv10023915m.g.v1.0, Thhalv10024025m.g.v1.0, Thhalv10024039m.g.v1.0, Thhalv10024041m.g.v1.0, Thhalv10024076m.g.v1.0, Thhalv10024090m.g.v1.0, Thhalv10024124m.g.v1.0, Thhalv10024133m.g.v1.0, Thhalv10024167m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... Sp2g02560.v2.2, Sp2g02570.v2.2, Sp2g02580.v2.2, Sp2g02590.v2.2, Sp2g02600.v2.2, Sp2g02610.v2.2, Sp2g23340.v2.2, Sp3g04430.v2.2, Sp3g28660.v2.2, Sp5g14790.v2.2, Sp7g03520.v2.2
Brassicaceae	Brassica nigra	12	BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... BniB02g058870.2N, BniB02g059080.2N, BniB02g059110.2N, BniB04g019510.2N, BniB04g021090.2N, BniB04g021110.2N, BniB04g021360.2N, BniB07g047770.2N, BniB08g059690.2N