Basic Information
Locus ID:
Sp2g02580.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 67650 | 68624 | - | Sp2g02580.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 36,382.46 Da | 38.96 | 102.22 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 188 | 298 | 6.6E-37 | IPR003690 |
| Pfam | PF02536 | mTERF | 14 | 196 | 1.6E-41 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 118 | 200 | 3.9E-9 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 201 | 308 | 2.3E-25 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 10 | 117 | 3.6E-8 | IPR038538 |
| SMART | SM00733 | mt_12 | 245 | 279 | 2.9 | IPR003690 |
| SMART | SM00733 | mt_12 | 143 | 173 | 58.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 178 | 208 | 0.0015 | IPR003690 |
| SMART | SM00733 | mt_12 | 213 | 244 | 0.0083 | IPR003690 |
| SMART | SM00733 | mt_12 | 9 | 35 | 140.0 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_010418172.1 | PREDICTED: uncharacterized protein LOC104703798 [Camelina sativa] | 0 |
| TrEMBL | A0A8T2BNK8 | Transcription termination factor mitochondrial/chloroplastic OS=Arabidopsis suecica OX=45249 GN=ISN44_As07g003200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |