Basic Information
Locus ID:
Sp2g02570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 64004 | 65256 | - | Sp2g02570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 44,608.82 Da | 39.60 | 94.94 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 255 | 367 | 2.0E-30 | IPR003690 |
| Pfam | PF02536 | mTERF | 88 | 262 | 2.1E-36 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 151 | 377 | 1.9E-32 | IPR038538 |
| SMART | SM00733 | mt_12 | 312 | 346 | 170.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 245 | 275 | 0.25 | IPR003690 |
| SMART | SM00733 | mt_12 | 102 | 133 | 1.4 | IPR003690 |
| SMART | SM00733 | mt_12 | 210 | 240 | 0.37 | IPR003690 |
| SMART | SM00733 | mt_12 | 280 | 311 | 0.93 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61990.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013631517.1 | PREDICTED: uncharacterized protein LOC106337046 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8S9IG45 | Mitochondrial transcription termination factor family protein OS=Brassica cretica OX=69181 GN=F2Q68_00025703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |