Basic Information
Locus ID:
Sp2g02560.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 60578 | 61855 | - | Sp2g02560.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 47,645.24 Da | 50.42 | 98.17 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 88 | 302 | 2.3E-60 | IPR003690 |
| Pfam | PF02536 | mTERF | 289 | 399 | 2.6E-36 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 66 | 180 | 3.6E-14 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 181 | 409 | 4.5E-40 | IPR038538 |
| SMART | SM00733 | mt_12 | 313 | 344 | 1.6E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 345 | 379 | 0.015 | IPR003690 |
| SMART | SM00733 | mt_12 | 278 | 308 | 1.3 | IPR003690 |
| SMART | SM00733 | mt_12 | 243 | 273 | 0.66 | IPR003690 |
| SMART | SM00733 | mt_12 | 138 | 170 | 56.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 102 | 133 | 4.4 | IPR003690 |
| SMART | SM00733 | mt_12 | 210 | 239 | 2900.0 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61990.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_024015433.1 | transcription termination factor MTERF4, chloroplastic [Eutrema salsugineum] | 0 |
| TrEMBL | A0A6D2ITA9 | Mitochondrial transcription termination factor family protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS17081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |