Basic Information
Locus ID:
Sp2g02550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-2 | 57965 | 59380 | - | Sp2g02550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 53,639.98 Da | 39.83 | 95.71 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 93 | 440 | 1.1E-111 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 230 | 451 | 8.7E-46 | IPR038538 |
| SMART | SM00733 | mt_12 | 353 | 384 | 0.0074 | IPR003690 |
| SMART | SM00733 | mt_12 | 107 | 139 | 0.0038 | IPR003690 |
| SMART | SM00733 | mt_12 | 385 | 419 | 0.0025 | IPR003690 |
| SMART | SM00733 | mt_12 | 248 | 278 | 29.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 144 | 176 | 22.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 318 | 348 | 0.0028 | IPR003690 |
| SMART | SM00733 | mt_12 | 283 | 313 | 0.026 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61960.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006391935.1 | transcription termination factor MTERF2, chloroplastic [Eutrema salsugineum] | 0 |
| TrEMBL | V4MDC0 | Transcription termination factor MTERF8, chloroplastic-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023447mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |