Basic Information
Locus ID:
Sp2g02110.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-1 | 936282 | 937673 | + | Sp2g02110.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 52,504.74 Da | 54.03 | 95.92 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 93 | 435 | 9.8E-115 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 65 | 252 | 9.2E-17 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 253 | 446 | 1.5E-46 | IPR038538 |
| SMART | SM00733 | mt_12 | 382 | 417 | 42.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 315 | 345 | 4.6E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 245 | 275 | 58.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 280 | 310 | 4.9E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 350 | 381 | 0.0033 | IPR003690 |
| SMART | SM00733 | mt_12 | 107 | 138 | 0.0013 | IPR003690 |
| SMART | SM00733 | mt_12 | 213 | 241 | 870.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 143 | 173 | 910.0 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006391863.1 | transcription termination factor MTERF2, chloroplastic [Eutrema salsugineum] | 0 |
| TrEMBL | V4KDF5 | Mitochondrial transcription termination factor family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023457mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |