Basic Information
Locus ID:
Sp2g02100.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-1 | 933464 | 934894 | + | Sp2g02100.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 53,602.85 Da | 46.55 | 97.44 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 96 | 438 | 1.1E-112 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 255 | 448 | 9.8E-41 | IPR038538 |
| SMART | SM00733 | mt_12 | 353 | 384 | 0.039 | IPR003690 |
| SMART | SM00733 | mt_12 | 385 | 419 | 0.073 | IPR003690 |
| SMART | SM00733 | mt_12 | 318 | 348 | 5.5E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 218 | 247 | 1700.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 147 | 179 | 15.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 110 | 141 | 0.0025 | IPR003690 |
| SMART | SM00733 | mt_12 | 251 | 281 | 420.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 283 | 313 | 1.5E-4 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62085.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006391858.2 | transcription termination factor MTERF15, mitochondrial isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | A0A0D2ZVR8 | Mitochodrial transcription termination factor-related protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |