Basic Information
Locus ID:
Sp2g00600.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-1 | 235599 | 240450 | + | Sp2g00600.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 92,799.49 Da | 43.42 | 86.03 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 556 | 689 | 7.51769E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 558 | 688 | 6.4E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 712 | 754 | 1.0E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 365 | 2.31E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 768 | 3.33E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 799 | 2.6E-97 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 36 | 352 | 1.5E-6 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 690 | 791 | 2.6E-97 | - |
| SMART | SM00382 | AAA_5 | 554 | 691 | 6.0E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 661 | 680 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 219 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_013677420.1 | putative cell division cycle ATPase isoform X1 [Brassica napus] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A078F1M2 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaC09g12360D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology