Basic Information
Locus ID:
Sp1g41640.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 5185914 | 5187801 | - | Sp1g41640.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 57,205.21 Da | 50.58 | 80.73 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 423 | 464 | 4.53543E-25 | - |
| Pfam | PF04564 | U-box domain | 420 | 485 | 8.4E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 414 | 487 | 5.56E-22 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 13 | 187 | 2.22E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.40.180 | - | 10 | 186 | 6.1E-12 | IPR016021 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 416 | 490 | 1.1E-25 | IPR013083 |
| SMART | SM00543 | if4_15 | 19 | 232 | 3.6E-15 | IPR003890 |
| SMART | SM00504 | Ubox_2 | 422 | 485 | 7.2E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 418 | 492 | 34.10194 | IPR003613 |
| Coils | Coil | Coil | 203 | 307 | - | - |
| Coils | Coil | Coil | 315 | 342 | - | - |
| Coils | Coil | Coil | 371 | 412 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56040.1 | HEAT/U-box domain-containing protein. | 0 |
| RefSeq | XP_013590299.1 | PREDICTED: putative U-box domain-containing protein 58 [Brassica oleracea var. oleracea] | 0 |
| Q9SGT2 | Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana OX=3702 GN=PUB58 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8X8BB66 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010786 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G56030.1, AT1G56040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g025480.2N |
| Poaceae | Oryza coarctata | 1 | Oco11G002870 |