Basic Information
Locus ID:
Sp1g41270.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 5051058 | 5052919 | + | Sp1g41270.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 37,125.52 Da | 42.31 | 64.00 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 223 | 287 | 7.89695E-16 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 44 | 127 | 4.3E-13 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 227 | 290 | 3.0E-9 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 39 | 134 | 3.66E-24 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 223 | 291 | 5.63E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 144 | 3.5E-20 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 205 | 295 | 5.0E-16 | IPR036910 |
| SMART | SM01014 | ARID_2 | 37 | 127 | 2.7E-21 | - |
| SMART | SM00501 | bright_3 | 41 | 132 | 2.8E-28 | IPR001606 |
| SMART | SM00398 | hmgende2 | 222 | 291 | 3.2E-12 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 131 | 20.45595 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 223 | 290 | 12.340369 | IPR009071 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006392614.1 | high mobility group B protein 10 [Eutrema salsugineum] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | V4JWQ7 | High mobility group B protein 10 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011675mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology