Basic Information
Locus ID:
Sp1g40520.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 4726450 | 4729219 | - | Sp1g40520.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 46,514.71 Da | 49.62 | 65.52 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 267 | 342 | 2.94135E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 61 | 131 | 1.32371E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 145 | 219 | 2.42478E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 269 | 326 | 4.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 61 | 127 | 2.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 146 | 216 | 1.9E-20 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 256 | 348 | 3.22E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 57 | 222 | 1.22E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 348 | 7.1E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 224 | 1.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 141 | 2.8E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 60 | 129 | 2.3E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 268 | 338 | 1.4E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 145 | 218 | 2.5E-26 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 267 | 342 | 15.203922 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 133 | 14.419374 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 144 | 222 | 18.495615 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54080.1 | oligouridylate-binding protein 1A. | 0 |
| RefSeq | XP_006392722.1 | oligouridylate-binding protein 1A [Eutrema salsugineum] | 0 |
| Q9SYG4 | Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1 | 0 | |
| TrEMBL | V4KRP9 | Oligouridylate-binding protein 1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011526mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology