Basic Information
Locus ID:
Sp1g40310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 4644743 | 4645720 | + | Sp1g40310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 36,564.23 Da | 42.19 | 77.91 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 119 | 162 | 1.27197E-18 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 168 | 2.36E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 167 | 3.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 261 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006392747.1 | RING-H2 finger protein ATL60 [Eutrema salsugineum] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | V4KRR9 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012011mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology