Basic Information
Locus ID:
Sp1g39640.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 4337867 | 4341680 | + | Sp1g39640.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 88,859.41 Da | 51.96 | 84.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 689 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 567 | 605 | 8.4E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 268 | 2.93E-18 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 481 | 791 | 9.73E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 458 | 794 | 3.7E-120 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 65 | 277 | 5.9E-24 | - |
| SMART | SM00320 | WD40_4 | 751 | 792 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 3.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 689 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 647 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 562 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 512 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 658 | 691 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 609 | 9.810144 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 266 | 12.004726 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 658 | 691 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 614 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 676 | 690 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 676 | 690 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 549 | 563 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 592 | 606 | 3.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 445 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_006392834.2 | protein SPA1-RELATED 4 isoform X1 [Eutrema salsugineum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | V4JXD4 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011249mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology