Basic Information
Locus ID:
Sp1g38260.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
leucine-rich repeat protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 3787261 | 3788698 | + | Sp1g38260.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 38,582.56 Da | 29.89 | 90.47 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 49 | 312 | 5.3E-42 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 26 | 313 | 2.73E-63 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 123 | 335 | 2.2E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 34 | 121 | 4.7E-24 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 47 | 318 | 34.392982 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51620.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006393027.1 | probable LRR receptor-like serine/threonine-protein kinase At1g51820 [Eutrema salsugineum] | 0 |
| Q9LIG2 | Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana OX=3702 GN=At3g21340 PE=1 SV=1 | 0 | |
| TrEMBL | V4KSH3 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011641mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011641m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g058380.2N, BniB06g029140.2N |