Basic Information
Locus ID:
Sp1g38030.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 3696911 | 3698809 | + | Sp1g38030.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 45,344.69 Da | 35.16 | 90.92 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 246 | 376 | 1.41034E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 58 | 220 | 5.4E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 259 | 367 | 2.9E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 101 | 389 | 2.43E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 23 | 241 | 8.7E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 403 | 6.2E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 286 | 367 | 3.6E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 52 | 249 | 2.7E-53 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 64 | 234 | 24.794056 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 245 | 403 | 24.904373 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 33 | 61 | 10.93678 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51380.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_009107205.1 | DEAD-box ATP-dependent RNA helicase 34 [Brassica rapa] | 0 |
| Q9C8J1 | DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana OX=3702 GN=RH34 PE=2 SV=2 | 0 | |
| TrEMBL | A0A397Y762 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA08T32335Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology