Basic Information
Locus ID:
Sp1g37240.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 3369027 | 3373023 | + | Sp1g37240.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 106,350.99 Da | 45.70 | 81.59 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 221 | 557 | 1.9792E-85 | - |
| CDD | cd16567 | RING-HC_RAD16_like | 671 | 714 | 6.95032E-21 | - |
| CDD | cd18793 | SF2_C_SNF | 813 | 917 | 3.80278E-54 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 671 | 713 | 1.1E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 812 | 908 | 1.4E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 238 | 635 | 6.2E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 565 | 965 | 1.14E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 664 | 728 | 1.93E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 205 | 557 | 1.02E-46 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 656 | 720 | 9.9E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 194 | 284 | 2.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 572 | 965 | 1.8E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 319 | 412 | 1.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 446 | 558 | 1.4E-28 | IPR038718 |
| SMART | SM00487 | ultradead3 | 217 | 534 | 2.4E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 672 | 710 | 6.8E-7 | IPR001841 |
| SMART | SM00490 | helicmild6 | 825 | 908 | 1.4E-17 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 788 | 961 | 13.416899 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 236 | 519 | 12.841709 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 672 | 711 | 12.84335 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 687 | 696 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| Coils | Coil | Coil | 267 | 287 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006393155.1 | helicase-like transcription factor CHR28 [Eutrema salsugineum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2C9E6 | SNF2-related N-terminal domain OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa01g034510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology