Basic Information
Locus ID:
Sp1g36850.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein folding in endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 3153430 | 3154689 | - | Sp1g36850.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 48,013.02 Da | 50.80 | 82.70 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 48 | 5.1E-7 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 133 | 305 | 5.89E-5 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 65 | 1.44E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 47 | 7.4E-7 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 8.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 51 | 9.92138 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_006393194.1 | F-box protein At1g49990 [Eutrema salsugineum] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | V4JYB9 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011517mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |