Basic Information
Locus ID:
Sp1g35780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 2695402 | 2699097 | - | Sp1g35780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 64,221.40 Da | 52.41 | 68.22 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 326 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 216 | 2.6E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 284 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 181 | 460 | 2.4E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 168 | 473 | 3.2E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 566 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 178 | 217 | 1.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 414 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 285 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 327 | 1.6E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 185 | 218 | 13.31649 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 294 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 185 | 218 | 16.189545 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 284 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 329 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 336 | 10.909469 | IPR001680 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 261 | 289 | 9.3E-5 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 391 | 419 | 9.3E-5 | IPR000009 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 9.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 314 | 328 | 9.0E-6 | IPR020472 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 196 | 216 | 9.3E-5 | IPR000009 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 204 | 218 | 9.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 128 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48870.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013591276.1 | PREDICTED: uncharacterized WD repeat-containing protein C3H5.08c [Brassica oleracea var. oleracea] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SEG4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology