Basic Information
Locus ID:
Sp1g35770.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 2694538 | 2695035 | - | Sp1g35770.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.10 | 18,132.89 Da | 39.48 | 80.97 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 6 | 130 | 1.37343E-50 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 116 | 163 | 4.8E-20 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 5 | 64 | 1.7E-24 | IPR016073 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 87 | 162 | 3.79E-25 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 5 | 64 | 1.02E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 165 | 4.1E-62 | IPR011333 |
| SMART | SM00512 | skp1_3 | 4 | 115 | 1.8E-44 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 165 | 4.6E-56 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60010.1 | SKP1-like 13. | 0 |
| RefSeq | XP_013675129.2 | SKP1-like protein 13 [Brassica napus] | 0 |
| Q9M1X5 | SKP1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=ASK13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816S727 | SKP1-like protein OS=Brassica napus OX=3708 GN=DARMORV10_A06P04160.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g35770.v2.2, Sp1g36050.v2.2 |