Basic Information
Locus ID:
Sp1g35510.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 2596323 | 2598325 | - | Sp1g35510.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 47,445.59 Da | 55.66 | 67.48 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 337 | 365 | 4.8E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 298 | 326 | 1.9E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 295 | 325 | 9.42E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 333 | 366 | 2.83E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 367 | 400 | 7.7E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 294 | 328 | 1.8E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 329 | 366 | 3.0E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 259 | 293 | 4.2E-8 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 0.039 | IPR001876 |
| SMART | SM00547 | zf_4 | 300 | 324 | 6.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 263 | 287 | 0.023 | IPR001876 |
| SMART | SM00547 | zf_4 | 339 | 363 | 4.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 260 | 290 | 8.286985 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 337 | 366 | 10.387335 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 298 | 327 | 9.698511 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 265 | 284 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 341 | 360 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_009147961.1 | zinc finger protein VAR3, chloroplastic [Brassica rapa] | 0 |
| TrEMBL | A0A1J3EDF6 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR21220_c0_g1_i1_g.70282 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology