Basic Information
Locus ID:
Sp1g35040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-2 | 2338852 | 2364411 | - | Sp1g35040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 454,425.63 Da | 45.67 | 87.47 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2606 | 2712 | 4.69024E-7 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3104 | 3409 | 3.4E-10 | IPR009543 |
| Pfam | PF00168 | C2 domain | 2605 | 2714 | 6.9E-5 | IPR000008 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.1E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 382 | 2.0E-72 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2228 | 2368 | 7.2E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2004 | 2141 | 6.6E-7 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 805 | 8.2E-37 | IPR031642 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2586 | 2713 | 2.29E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2587 | 2746 | 1.5E-7 | IPR035892 |
| SMART | SM00239 | C2_3c | 2605 | 2734 | 0.0025 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2583 | 2732 | 10.400389 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4061 | 4090 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2184 | 2210 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.5 | - | 0 |
| RefSeq | XP_006393484.2 | uncharacterized protein LOC18010485 [Eutrema salsugineum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3IH98 | Putative vacuolar protein sorting-associated protein 13A OS=Noccaea caerulescens OX=107243 GN=MP_TR22354_c0_g1_i1_g.65240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology