Basic Information
Locus ID:
Sp1g30350.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 12031977 | 12033594 | - | Sp1g30350.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 37,952.04 Da | 62.82 | 84.61 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 219 | 262 | 7.96434E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 16 | 141 | 1.54183E-44 | IPR044744 |
| Pfam | PF02225 | PA domain | 43 | 126 | 1.6E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 219 | 262 | 1.3E-9 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 63 | 150 | 7.85E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 265 | 1.44E-16 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 7 | 137 | 3.3E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 270 | 7.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 220 | 261 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 220 | 262 | 12.1057 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35630.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006304439.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 5 [Capsella rubella] | 0 |
| F4HZZ5 | Receptor homology region, transmembrane domain- and RING domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=RMR5 PE=2 SV=1 | 0 | |
| TrEMBL | R0GN09 | RING-type domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10011046mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology