Basic Information
Locus ID:
Sp1g29020.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 11260305 | 11263835 | - | Sp1g29020.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 51,852.70 Da | 43.31 | 82.77 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 146 | 182 | 4.9E-12 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 143 | 233 | 9.42E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 124 | 182 | 1.2E-9 | - |
| SMART | SM00256 | fbox_2 | 146 | 186 | 1.8E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 245 | 435 | 9.6E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 140 | 187 | 12.623809 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33530.1 | F-box family protein. | 0 |
| RefSeq | XP_020866348.1 | LOW QUALITY PROTEIN: putative F-box protein At1g33530 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9C800 | Putative F-box protein At1g33530 OS=Arabidopsis thaliana OX=3702 GN=At1g33530 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2K111 | F-box domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS32561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G33530.1, AT1G71320.1, AT3G62350.1, AT3G62380.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009802m.g.v1.0, Thhalv10009811m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g28940.v2.2, Sp1g29020.v2.2, Sp1g33930.v2.2 ... |
| Brassicaceae | Brassica nigra | 2 | BniB05g024070.2N, BniB08g066240.2N |