Basic Information
Locus ID:
Sp1g28950.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
DNA RNA polymerases superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 11209494 | 11213272 | - | Sp1g28950.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 49,576.51 Da | 65.96 | 87.80 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 39 | 1.3E-5 | IPR001810 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 136 | 249 | 2.66E-12 | IPR012337 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 69 | 2.88E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 122 | 5.8E-6 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 136 | 264 | 5.4E-10 | IPR036397 |
| SMART | SM00256 | fbox_2 | 3 | 43 | 1.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 42 | 11.855471 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09650.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_011624299.1 | uncharacterized protein LOC105420836, partial [Amborella trichopoda] | 0 |
| O04488 | F-box/LRR-repeat/kelch-repeat protein At1g09650 OS=Arabidopsis thaliana OX=3702 GN=At1g09650 PE=2 SV=1 | 0 | |
| TrEMBL | V5ZTC4 | Hypothetical transposable element-related protein (Fragment) OS=Boechera divaricarpa OX=115915 GN=TER1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg32691, Sbi_jg54070, Sbi_jg60491 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28950.v2.2 |