Basic Information
Locus ID:
Sp1g28520.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 11026691 | 11027533 | - | Sp1g28520.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 32,190.87 Da | 51.02 | 74.79 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 101 | 144 | 5.29692E-16 | - |
| Pfam | PF13639 | Ring finger domain | 100 | 144 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 151 | 5.14E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 150 | 5.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 3.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 12.445019 | IPR001841 |
| Coils | Coil | Coil | 229 | 249 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32361.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL1F precursor. | 0 |
| RefSeq | XP_022546635.2 | RING-H2 finger protein ATL81-like [Brassica napus] | 0 |
| Q9LQM2 | RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P5Y243 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T38930Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G32361.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28520.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g048720.2N |