Basic Information
Locus ID:
Sp1g28150.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 10832904 | 10837947 | - | Sp1g28150.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 109,954.44 Da | 47.76 | 74.42 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 810 | 955 | 7.36111E-56 | - |
| Pfam | PF06337 | DUSP domain | 110 | 203 | 1.5E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 373 | 954 | 4.2E-87 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 371 | 957 | 4.12E-112 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 84 | 203 | 4.84E-30 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 216 | 302 | 2.3E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 707 | 964 | 1.1E-58 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 79 | 215 | 4.5E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 356 | 576 | 9.6E-70 | - |
| SMART | SM00695 | dusp | 106 | 205 | 1.1E-44 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 87 | 202 | 19.119513 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 373 | 957 | 60.459854 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 374 | 389 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 899 | 916 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 735 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32850.1 | ubiquitin-specific protease 11. | 0 |
| RefSeq | XP_048594978.1 | putative ubiquitin carboxyl-terminal hydrolase 11 isoform X1 [Brassica napus] | 0 |
| Q9MAQ3 | Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A397XXA1 | Ubiquitin carboxyl-terminal hydrolase OS=Brassica campestris OX=3711 GN=BRARA_I02680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology