Basic Information
Locus ID:
Sp1g27930.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 10735770 | 10736270 | + | Sp1g27930.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 18,630.70 Da | 36.42 | 84.70 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 95 | 156 | 1.22862E-17 | IPR002048 |
| CDD | cd00051 | EFh | 16 | 78 | 1.86793E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 93 | 155 | 7.3E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 15 | 77 | 3.4E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 156 | 5.0E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 5 | 162 | 3.3E-47 | - |
| SMART | SM00054 | efh_1 | 52 | 80 | 8.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 131 | 159 | 4.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 16 | 44 | 3.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 95 | 123 | 3.3E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 9.101698 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 91 | 126 | 14.346033 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 127 | 162 | 12.449146 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 15.238686 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 25 | 37 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 140 | 152 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 104 | 116 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_013584973.1 | PREDICTED: probable calcium-binding protein CML17 [Brassica oleracea var. oleracea] | 0 |
| Q9LQN4 | Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078IZ72 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaC05g51520D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology