Basic Information
Locus ID:
Sp1g27690.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
vacuolar proton-transporting V-type ATPase complex assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 10602914 | 10604026 | + | Sp1g27690.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 43,052.44 Da | 47.87 | 78.14 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 41 | 5.1E-10 | IPR001810 |
| Pfam | PF07734 | F-box associated | 196 | 357 | 1.5E-38 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 67 | 1.19E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 43 | 4.9E-9 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 5.1E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 91 | 333 | 4.9E-47 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 11.272594 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47390.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013585027.1 | PREDICTED: putative F-box protein At1g47390 [Brassica oleracea var. oleracea] | 0 |
| Q9FX09 | Putative F-box protein At1g47390 OS=Arabidopsis thaliana OX=3702 GN=At1g47390 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7QSA7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_066919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |