Basic Information
Locus ID:
Sp1g26260.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 9946878 | 9949615 | + | Sp1g26260.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 73,092.01 Da | 46.60 | 84.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 123 | 2.07863E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 114 | 1.1E-5 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 214 | 484 | 2.6E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 115 | 8.63E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 6 | 119 | 5.7E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 10.654275 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 214 | 508 | 89.516434 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 661 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_002890870.1 | BTB/POZ domain-containing protein At1g30440 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2CMF0 | NPH3 domain OS=Arabidopsis suecica OX=45249 GN=ISN44_As06g029730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology