Basic Information
Locus ID:
Sp1g24550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 9143739 | 9146836 | + | Sp1g24550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 45,395.46 Da | 58.53 | 68.78 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16531 | RING-HC_RING1_like | 49 | 88 | 1.91186E-15 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 48 | 87 | 1.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 118 | 9.56E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 118 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 49 | 87 | 2.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 88 | 12.902362 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 64 | 73 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 198 | - | - |
| Coils | Coil | Coil | 114 | 134 | - | - |
| Coils | Coil | Coil | 385 | 401 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.1 | RING 1A. Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | 0 |
| RefSeq | XP_024007997.1 | putative E3 ubiquitin-protein ligase RING1a [Eutrema salsugineum] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A6D2HRM5 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS2978 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g24550.v2.2, Sp1g24560.v2.2, Sp6g10190.v2.2 |