Basic Information
Locus ID:
Sp1g24210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 8981705 | 8983849 | - | Sp1g24210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 41,559.06 Da | 53.25 | 95.83 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 317 | 360 | 5.1253E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 37 | 90 | 1.6E-9 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 318 | 360 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 362 | 2.96E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 364 | 4.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 4.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.267982 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46494.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010501627.2 | PREDICTED: RING-H2 finger protein ATL20-like [Camelina sativa] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A8S1ZFS0 | Genome assembly, chromosome: 1 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS2272 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology