Basic Information
Locus ID:
Sp1g23470.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
GYF domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 8702292 | 8708620 | + | Sp1g23470.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 165,755.50 Da | 57.13 | 72.11 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 1088 | 1222 | 2.66374E-20 | - |
| CDD | cd18139 | HLD_clamp_RarA | 1229 | 1310 | 1.39428E-18 | - |
| CDD | cd00072 | GYF | 466 | 524 | 2.62235E-18 | IPR003169 |
| Pfam | PF02213 | GYF domain | 470 | 514 | 1.8E-10 | IPR003169 |
| Pfam | PF16193 | AAA C-terminal domain | 1252 | 1335 | 3.7E-26 | IPR032423 |
| Pfam | PF00627 | UBA/TS-N domain | 988 | 1020 | 1.3E-5 | IPR015940 |
| Pfam | PF12002 | MgsA AAA+ ATPase C terminal | 1336 | 1487 | 6.9E-58 | IPR021886 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 1112 | 1223 | 1.5E-15 | IPR003959 |
| SUPERFAMILY | SSF55277 | GYF domain | 459 | 523 | 3.53E-15 | IPR035445 |
| SUPERFAMILY | SSF46934 | UBA-like | 987 | 1028 | 3.83E-10 | IPR009060 |
| SUPERFAMILY | SSF48019 | post-AAA+ oligomerization domain-like | 1320 | 1488 | 1.87E-65 | IPR008921 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1070 | 1290 | 1.01E-44 | IPR027417 |
| Gene3D | G3DSA:3.30.1490.40 | - | 454 | 542 | 3.2E-14 | IPR035445 |
| Gene3D | G3DSA:1.20.272.10 | - | 1310 | 1413 | 1.3E-43 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 986 | 1037 | 7.3E-12 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 1229 | 1292 | 6.8E-17 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1066 | 1227 | 4.3E-45 | IPR027417 |
| Gene3D | G3DSA:1.10.3710.10 | - | 1414 | 1501 | 4.1E-21 | - |
| SMART | SM00382 | AAA_5 | 1108 | 1229 | 1.5E-13 | IPR003593 |
| SMART | SM00444 | gyf_5 | 467 | 522 | 3.0E-20 | IPR003169 |
| SMART | SM00165 | uba_6 | 984 | 1022 | 8.4E-6 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 983 | 1023 | 11.872175 | IPR015940 |
| ProSiteProfiles | PS50829 | GYF domain profile. | 466 | 517 | 14.478539 | IPR003169 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1053 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 586 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24300.1 | GYF domain-containing protein. | 0 |
| RefSeq | XP_006415763.1 | uncharacterized protein LOC18992317 isoform X2 [Eutrema salsugineum] | 0 |
| Q8CG07 | ATPase WRNIP1 OS=Rattus norvegicus OX=10116 GN=Wrnip1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MQX4 | GYF domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006556mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19016 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25097 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027059 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132400 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13485, Sbi_jg13486, Sbi_jg52394 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9457 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023135 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33479, Sgl38840 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003817, gene:ENSEOMG00000004173 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0021810 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30279280, pistato.v30280870 |
| Apiaceae | Apium graveolens | 1 | Ag11G04148 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716204 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2604.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G24290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009719m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g23470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g032490.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2293 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g20630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.373 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031704 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1508, evm.TU.LG20.370 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.1049 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23736 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21742 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.1, add.evm.TU.utg000027l.2 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017371, Maker00017425 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20993 |
| Salicaceae | Populus euphratica | 1 | populus_peu18404 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633167 |
| Solanaceae | Solanum chilense | 1 | SOLCI006476400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013066 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10264 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0341 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23610.v3.1 |