Basic Information
Locus ID:
Sp1g22360.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 8224931 | 8231098 | - | Sp1g22360.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 133,795.52 Da | 38.01 | 79.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 885 | 1200 | 4.89E-17 | IPR036322 |
| Gene3D | G3DSA:3.30.160.360 | - | 12 | 138 | 1.5E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 873 | 1211 | 1.6E-9 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1147 | 1168 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS51543 | FYR domain FYRC motif profile. | 68 | 148 | 13.385965 | IPR003889 |
| ProSiteProfiles | PS51542 | FYR domain FYRN motif profile. | 8 | 67 | 15.214141 | IPR003888 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 649 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26330.1 | DNA binding. | 0 |
| RefSeq | XP_009115354.2 | uncharacterized protein LOC103840608 [Brassica rapa] | 0 |
| TrEMBL | V4K9C8 | FYR C-terminal domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006590mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3879 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026371 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g136210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14023, Sbi_jg51934 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9936 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023562, GOSA_00023563 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34851, Sgl40238 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000026349 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0016880, CQ.Regalona.r1.6BG0017990 |
| Apiaceae | Apium graveolens | 1 | Ag5G02080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722881 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2758.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G33661 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G26330.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006590m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g22360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g040470.2N, BniB04g045200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0440 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0646s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.377 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32599 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1182, AH03.1183, BH03.1346 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0328520, gene-QOZ80_4BG0360570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0467390.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003840 |
| Poaceae | Oryza coarctata | 1 | Oco17G000080 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g01360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G098200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705155 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G006340, Chr0G006350, Chr23G019290, Chr26G000610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G272500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG026270, gene_TRIDC5BG027210 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G158800.1, TraesCS5B02G155300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095700_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19193 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.514, evm.TU.LG21.211 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g06220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.458 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22834, nbisL1-mrna-22880 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1663 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14969 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000013l.314, evm.TU.utg000013l.315 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006702 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14910 |
| Salicaceae | Populus euphratica | 2 | populus_peu06822, populus_peu06823 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641940 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018710 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24214_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0477 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20870.v3.1 |